PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00953g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 737aa    MW: 79635.8 Da    PI: 6.7332
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00953g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07309329526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f++ G C++Gd C +aHg
  Peaxi162Scf00953g00002.1 309 PCPEFRK-GACRRGDMCEYAHG 329
                               8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.11E-1735163IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1736164IPR020683Ankyrin repeat-containing domain
CDDcd002043.68E-1536162No hitNo description
PfamPF127965.4E-1071153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.384159IPR020683Ankyrin repeat-containing domain
SMARTSM002480.004784114IPR002110Ankyrin repeat
PRINTSPR014152.6E-585100IPR002110Ankyrin repeat
PROSITE profilePS5008811.514119154IPR002110Ankyrin repeat
SMARTSM002487.6E-4119151IPR002110Ankyrin repeat
PRINTSPR014152.6E-5138152IPR002110Ankyrin repeat
SMARTSM003569.5E-6304330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981309331IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4309329IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643339363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MCTGPERSNS CSSTNQSITD SKSSMKGITK LTVETEDSFS SLLELASNND LEGFKRSIER  60
DATAIDEVGL WLVRKKGSKQ IVNEERTPLM VAASYGSLDV LKLIISNPEV DVNRACGPNK  120
CTALHCATSG GSVNVVDAVK LLLSAGADPN VEDANGQRPA DVIVIPPRLP GARASLEEML  180
LNNSSDGSVG ECKLRVSVTT SNASSPVLSS SPENGSPYSP SDSLSSPMAS KFSDIPANSA  240
PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTG CARRVCFFAH  360
TTEELRPLYV STGSAVPSPR SAASAASVMD MAAALNLFPG SPSAHSMMSP SAFNQPMSPT  420
ANGMSHSSAP WPQPNVPTLH LPGSNLQSSR LRSSLSARDI PPEDFNMLQD FDAQQLLLND  480
MACYSQARPN SASLNRSGRS KTLTPSNLEE LFSAEITSSP RYSDQAAASG VFSPSHKSAF  540
FNQFQQQQSM LSPINTNVFS PKNMEHPLLQ ASFGVSSSGR MSPRSMEPIS PMSARSLSAF  600
AQREKQQQQL RSLSSRDLGS NNASSIVGSP VGGNSWSNWG SPNGKVDWSV NGSGLGHNMR  660
RSSSFEQLNN GEEPDLSWVQ SLVKESPSEM KEKQQAAPNS GAAPSGEGSK NSSQIDSVDH  720
SVLGAWLEQM QLDQLVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434806.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM1A9250.0M1A925_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000175450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain